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LOC101245713 pectinesterase family protein [ Solanum lycopersicum (tomato) ]

Gene ID: 101245713, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101245713
Gene description
pectinesterase family protein
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 11 NC_015448.3 (604757..607454, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 11 NC_015448.2 (604744..607441, complement)

Chromosome 11 - NC_015448.3Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 Neighboring gene transcription factor HEC3 Neighboring gene protein trichome berefringence-like 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase family protein
Names
plant invertase/pectin methylesterase inhibitor superfamily
probable pectinesterase/pectinesterase inhibitor 51

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324463.1 → NP_001311392.1  pectinesterase family protein

    Status: VALIDATED

    Source sequence(s)
    AEKE03003147, AK325251
    UniProtKB/TrEMBL
    A0A3Q7IQ29
    Conserved Domains (3) summary
    PLN02708
    Location:22 → 559
    PLN02708; Probable pectinesterase/pectinesterase inhibitor
    pfam04043
    Location:57 → 202
    PMEI; Plant invertase/pectin methylesterase inhibitor
    cl01911
    Location:251 → 553
    Pectinesterase; Pectinesterase

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015448.3 Reference SL3.0 Primary Assembly

    Range
    604757..607454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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