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LOC101245395 SNF2 domain-containing protein CLASSY 4-like [ Solanum lycopersicum (tomato) ]

Gene ID: 101245395, updated on 11-Apr-2024

Summary

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Gene symbol
LOC101245395
Gene description
SNF2 domain-containing protein CLASSY 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101245395 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (77341242..77347827, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (77530741..77537290, complement)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104647688 Neighboring gene uncharacterized LOC112940739 Neighboring gene cell division control protein 48 homolog C Neighboring gene crossover junction endonuclease MUS81

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SNF2 domain-containing protein CLASSY 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    77341242..77347827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019214979.2 → XP_019070524.1  SNF2 domain-containing protein CLASSY 4-like

  2. XM_004229243.4 → XP_004229291.1  SNF2 domain-containing protein CLASSY 4-like

    Conserved Domains (3) summary
    smart00487
    Location:507 → 735
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:542 → 714
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:843 → 977
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases