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LOC101245223 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [ Solanum lycopersicum (tomato) ]

Gene ID: 101245223, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101245223
Gene description
1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101245223 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (43674067..43675161, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (43106297..43107389, complement)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene endonuclease MutS2 Neighboring gene allantoinase Neighboring gene uncharacterized LOC101245620 Neighboring gene general transcription and DNA repair factor IIH subunit TFB2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phylloquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    43674067..43675161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004232811.4 → XP_004232859.1  1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1

    UniProtKB/TrEMBL
    A0A3Q7F4J8
    Conserved Domains (1) summary
    cl00509
    Location:17 → 162
    hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
Nucleotide Protein
Heading Accession and Version

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