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LOC101216377 pectinesterase [ Cucumis sativus (cucumber) ]

Gene ID: 101216377, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101216377
Gene description
pectinesterase
Locus tag
Csa_004290
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (28782651..28784796, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (26757023..26758968, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein PROTODERMAL FACTOR 2 Neighboring gene CRIB domain-containing protein RIC10 Neighboring gene probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B Neighboring gene cysteine-rich PDZ-binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    28782651..28784796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004134704.3 → XP_004134752.1  pectinesterase

    See identical proteins and their annotated locations for XP_004134752.1

    UniProtKB/TrEMBL
    A0A0A0KHV5
    Conserved Domains (1) summary
    PLN02301
    Location:1 → 555
    PLN02301; pectinesterase/pectinesterase inhibitor
Nucleotide Protein
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