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LOC101216287 hypothetical protein [ Cucumis sativus (cucumber) ]

Gene ID: 101216287, updated on 7-Apr-2023

Summary

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Gene symbol
LOC101216287
Gene description
hypothetical protein
Locus tag
Csa_010233
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (5887954..5904004)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (5702533..5718542)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L15-1 Neighboring gene 60S ribosomal protein L15-1 Neighboring gene protein root UVB sensitive 6 Neighboring gene 22.0 kDa class IV heat shock protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC101216287

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    5887954..5904004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011652283.2 → XP_011650585.1  uncharacterized protein LOC101216287

    See identical proteins and their annotated locations for XP_011650585.1

    UniProtKB/TrEMBL
    A0A0A0L2R2
    Conserved Domains (3) summary
    COG5147
    Location:433 → 576
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam13921
    Location:380 → 441
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    pfam00249
    Location:535 → 580
    Myb_DNA-binding; Myb-like DNA-binding domain

  2. XM_031882942.1 → XP_031738802.1  uncharacterized protein LOC101216287

    UniProtKB/TrEMBL
    A0A0A0L2R2
    Conserved Domains (3) summary
    COG5147
    Location:433 → 576
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam13921
    Location:380 → 441
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    pfam00249
    Location:535 → 580
    Myb_DNA-binding; Myb-like DNA-binding domain

  3. XM_011652282.2 → XP_011650584.1  uncharacterized protein LOC101216287

    See identical proteins and their annotated locations for XP_011650584.1

    UniProtKB/TrEMBL
    A0A0A0L2R2
    Conserved Domains (3) summary
    COG5147
    Location:433 → 576
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam13921
    Location:380 → 441
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    pfam00249
    Location:535 → 580
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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