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LOC101215687 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic [ Cucumis sativus (cucumber) ]

Gene ID: 101215687, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101215687
Gene description
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic
Locus tag
Csa_019021
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (17738348..17744883, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (15995468..16002194, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene cystathionine beta-lyase, chloroplastic Neighboring gene uncharacterized LOC101215930 Neighboring gene uncharacterized LOC101208160 Neighboring gene protein DSS1 HOMOLOG ON CHROMOSOME V

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    17738348..17744883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004144188.3 → XP_004144236.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_004144236.1

    UniProtKB/TrEMBL
    A0A0A0KGQ9
    Conserved Domains (1) summary
    PLN02447
    Location:65 → 801
    PLN02447; 1,4-alpha-glucan-branching enzyme
Nucleotide Protein
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