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LOC101213903 malate dehydrogenase, chloroplastic [ Cucumis sativus (cucumber) ]

Gene ID: 101213903, updated on 26-Jun-2024

Summary

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Gene symbol
LOC101213903
Gene description
malate dehydrogenase, chloroplastic
Locus tag
Csa_013195
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101213903 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (1503812..1506415, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (1476478..1479067, complement)

Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene protein RKD1 Neighboring gene pentatricopeptide repeat-containing protein At3g47530 Neighboring gene geranylgeranyl diphosphate reductase, chloroplastic Neighboring gene GDSL esterase/lipase At1g74460

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    1503812..1506415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011661796.2 → XP_011660098.1  malate dehydrogenase, chloroplastic

    UniProtKB/TrEMBL
    A0A0A0LSB1
    Conserved Domains (1) summary
    PLN00106
    Location:84 → 399
    PLN00106; malate dehydrogenase

  2. XM_031880697.1 → XP_031736557.1  malate dehydrogenase, chloroplastic

    UniProtKB/TrEMBL
    A0A0A0LSB1
    Conserved Domains (1) summary
    PLN00106
    Location:84 → 399
    PLN00106; malate dehydrogenase
Nucleotide Protein
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