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LOC101204223 homeobox protein ATH1 [ Cucumis sativus (cucumber) ]

Gene ID: 101204223, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101204223
Gene description
homeobox protein ATH1
Locus tag
Csa_018652
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (17610181..17615445)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (16205473..16210784)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene K(+) efflux antiporter 6 Neighboring gene transcription factor MYBS3 Neighboring gene protein NDL2 Neighboring gene far upstream element-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein ATH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    17610181..17615445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011651234.2 → XP_011649536.1  homeobox protein ATH1 isoform X1

    See identical proteins and their annotated locations for XP_011649536.1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  2. XM_031880866.1 → XP_031736726.1  homeobox protein ATH1 isoform X2

    Conserved Domains (2) summary
    pfam05920
    Location:390 → 429
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:192 → 329
    POX; Associated with HOX

  3. XM_031880864.1 → XP_031736724.1  homeobox protein ATH1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  4. XM_031880862.1 → XP_031736722.1  homeobox protein ATH1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  5. XM_031880863.1 → XP_031736723.1  homeobox protein ATH1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  6. XM_031880861.1 → XP_031736721.1  homeobox protein ATH1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  7. XM_031880865.1 → XP_031736725.1  homeobox protein ATH1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX

  8. XM_011651233.2 → XP_011649535.1  homeobox protein ATH1 isoform X1

    See identical proteins and their annotated locations for XP_011649535.1

    UniProtKB/TrEMBL
    A0A0A0LKF3
    Conserved Domains (2) summary
    pfam05920
    Location:415 → 454
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:217 → 354
    POX; Associated with HOX
Nucleotide Protein
Heading Accession and Version

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