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rnpc3 RNA-binding region (RNP1, RRM) containing 3 [ Takifugu rubripes (torafugu) ]

Gene ID: 101080053, updated on 8-Mar-2024

Summary

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Gene symbol
rnpc3
Gene description
RNA-binding region (RNP1, RRM) containing 3
See related
Ensembl:ENSTRUG00000022341
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See rnpc3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 10 NC_042294.1 (1951263..1959274)
101 previous assembly FUGU5 (GCF_000180615.1) 10 NC_018899.1 (761383..769413, complement)

Chromosome 10 - NC_042294.1Genomic Context describing neighboring genes Neighboring gene olfactomedin 3a Neighboring gene collagen, type XI, alpha 1a Neighboring gene uncharacterized LOC115251271 Neighboring gene transfer RNA valine (anticodon UAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U12 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding region-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042294.1 Reference fTakRub1.2 Primary Assembly

    Range
    1951263..1959274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003967842.3 → XP_003967891.3  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A674P2M1, A0A674P3Z7

  2. XM_029843027.1 → XP_029698887.1  RNA-binding region-containing protein 3

    UniProtKB/TrEMBL
    A0A674P2M1, A0A674P3Z7
    Related
    ENSTRUP00000079808.1, ENSTRUT00000091909.1
    Conserved Domains (3) summary
    COG0724
    Location:329 → 506
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12238
    Location:25 → 97
    RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
    cd12239
    Location:415 → 497
    RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins
Nucleotide Protein
Heading Accession and Version

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