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LOC101078054 glutamate receptor 1-like [ Takifugu rubripes (torafugu) ]

Gene ID: 101078054, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101078054
Gene description
glutamate receptor 1-like
See related
Ensembl:ENSTRUG00000000702
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 15 NC_042299.1 (6227278..6253992, complement)
101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072435.1 (54931..79155)

Chromosome 15 - NC_042299.1Genomic Context describing neighboring genes Neighboring gene preproinsulin Neighboring gene NIPA like domain containing 4 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMPA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042299.1 Reference fTakRub1.2 Primary Assembly

    Range
    6227278..6253992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029848370.1 → XP_029704230.1  glutamate receptor 1-like isoform X2

    Conserved Domains (2) summary
    cd13729
    Location:404 → 817
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cl10011
    Location:26 → 390
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

  2. XM_029848371.1 → XP_029704231.1  glutamate receptor 1-like isoform X3

  3. XM_029848369.1 → XP_029704229.1  glutamate receptor 1-like isoform X1

    UniProtKB/TrEMBL
    H2RNH1
    Related
    ENSTRUP00000001684.3, ENSTRUT00000001692.3
    Conserved Domains (2) summary
    cd13729
    Location:404 → 817
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cl10011
    Location:26 → 390
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

  4. XM_029848372.1 → XP_029704232.1  glutamate receptor 1-like isoform X4

    Conserved Domains (2) summary
    cd13729
    Location:404 → 817
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cl10011
    Location:26 → 390
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

  5. XM_029848373.1 → XP_029704233.1  glutamate receptor 1-like isoform X5

RNA

  1. XR_003890966.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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