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dscamb Down syndrome cell adhesion molecule b [ Takifugu rubripes (torafugu) ]

Gene ID: 101073749, updated on 8-Mar-2024

Summary

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Gene symbol
dscamb
Gene description
Down syndrome cell adhesion molecule b
See related
Ensembl:ENSTRUG00000001465
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
dscam
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
33
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 11 NC_042295.1 (4497576..4571369, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 11 NC_018900.1 (1768275..1840216, complement)

Chromosome 11 - NC_042295.1Genomic Context describing neighboring genes Neighboring gene SH3 domain binding glutamate-rich protein Neighboring gene immunoglobulin superfamily, member 5b Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene transmembrane protease serine 2-like Neighboring gene beta-secretase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Down syndrome cell adhesion molecule homolog
Names
DS cell adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042295.1 Reference fTakRub1.2 Primary Assembly

    Range
    4497576..4571369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029844100.1 → XP_029699960.1  Down syndrome cell adhesion molecule homolog isoform X3

    UniProtKB/TrEMBL
    H2RTA1
    Conserved Domains (9) summary
    cd05734
    Location:706 → 785
    Ig_DSCAM; Immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:518 → 576
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:417 → 501
    IG; Immunoglobulin
    smart00410
    Location:320 → 401
    IG_like; Immunoglobulin like
    cd00063
    Location:987 → 1085
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:242 → 303
    Ig; Immunoglobulin domain
    pfam00041
    Location:1192 → 1273
    fn3; Fibronectin type III domain
    pfam07679
    Location:607 → 685
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:803 → 890
    Ig; Immunoglobulin domain

  2. XM_029844097.1 → XP_029699957.1  Down syndrome cell adhesion molecule homolog isoform X1

    UniProtKB/TrEMBL
    H2RTA1
    Conserved Domains (9) summary
    cd05734
    Location:706 → 785
    Ig_DSCAM; Immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:518 → 576
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:417 → 501
    IG; Immunoglobulin
    smart00410
    Location:320 → 401
    IG_like; Immunoglobulin like
    cd00063
    Location:987 → 1085
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:242 → 303
    Ig; Immunoglobulin domain
    pfam00041
    Location:1192 → 1273
    fn3; Fibronectin type III domain
    pfam07679
    Location:607 → 685
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:803 → 890
    Ig; Immunoglobulin domain

  3. XM_029844101.1 → XP_029699961.1  Down syndrome cell adhesion molecule homolog isoform X4

    UniProtKB/TrEMBL
    A0A674MYD2, H2RTA1
    Related
    ENSTRUP00000066037.1, ENSTRUT00000075013.1

  4. XM_029844098.1 → XP_029699958.1  Down syndrome cell adhesion molecule homolog isoform X2

    UniProtKB/TrEMBL
    H2RTA1
    Related
    ENSTRUP00000003368.3, ENSTRUT00000003387.3
Nucleotide Protein
Heading Accession and Version

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