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LOC101072417 low-density lipoprotein receptor-like [ Takifugu rubripes (torafugu) ]

Gene ID: 101072417, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101072417
Gene description
low-density lipoprotein receptor-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See LOC101072417 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 20 NC_042304.1 (12391994..12400477, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 20 NC_018909.1 (10365615..10374142)

Chromosome 20 - NC_042304.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105417956 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 Neighboring gene potassium voltage-gated channel subfamily V member 2-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A7 Neighboring gene microtubule associated serine/threonine kinase 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042304.1 Reference fTakRub1.2 Primary Assembly

    Range
    12391994..12400477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011615021.2 → XP_011613323.2  low-density lipoprotein receptor-like

    Conserved Domains (4) summary
    smart00192
    Location:59 → 92
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:377 → 419
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:107 → 141
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam14670
    Location:146 → 174
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
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