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LOC101072082 SAM and SH3 domain-containing protein 1-like [ Takifugu rubripes (torafugu) ]

Gene ID: 101072082, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101072082
Gene description
SAM and SH3 domain-containing protein 1-like
See related
Ensembl:ENSTRUG00000024046
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See LOC101072082 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
23
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 2 NC_042286.1 (3911163..3937172, complement)
101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072464.1 (81050..107296)

Chromosome 2 - NC_042286.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105418862 Neighboring gene zinc finger and BTB domain containing 24 Neighboring gene D-aspartate oxidase Neighboring gene syntaxin binding protein 5b (tomosyn) Neighboring gene uncharacterized LOC115247703 Neighboring gene RAB32b, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SAM and SH3 domain-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042286.1 Reference fTakRub1.2 Primary Assembly

    Range
    3911163..3937172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011619879.2 → XP_011618181.2  SAM and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (3) summary
    cd11967
    Location:655 → 711
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:508 → 653
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:730 → 795
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_011619880.2 → XP_011618182.2  SAM and SH3 domain-containing protein 1-like isoform X1

    Conserved Domains (3) summary
    cd11967
    Location:655 → 711
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:508 → 653
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:730 → 795
    SAM_superfamily; SAM (Sterile alpha motif )

  3. XM_011619883.2 → XP_011618185.2  SAM and SH3 domain-containing protein 1-like isoform X2

    Conserved Domains (3) summary
    cd11967
    Location:654 → 710
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:507 → 652
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:729 → 794
    SAM_superfamily; SAM (Sterile alpha motif )

  4. XM_029829331.1 → XP_029685191.1  SAM and SH3 domain-containing protein 1-like isoform X3

    Conserved Domains (3) summary
    cd11967
    Location:654 → 710
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:508 → 652
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:729 → 794
    SAM_superfamily; SAM (Sterile alpha motif )

  5. XM_011619884.2 → XP_011618186.2  SAM and SH3 domain-containing protein 1-like isoform X5

    Conserved Domains (3) summary
    cd11967
    Location:500 → 556
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:353 → 498
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:575 → 640
    SAM_superfamily; SAM (Sterile alpha motif )

  6. XM_029829351.1 → XP_029685211.1  SAM and SH3 domain-containing protein 1-like isoform X6

    Conserved Domains (3) summary
    cd11967
    Location:471 → 527
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:324 → 469
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:546 → 611
    SAM_superfamily; SAM (Sterile alpha motif )

  7. XM_029829337.1 → XP_029685197.1  SAM and SH3 domain-containing protein 1-like isoform X4

    Conserved Domains (3) summary
    cd11967
    Location:503 → 559
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:356 → 501
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:578 → 643
    SAM_superfamily; SAM (Sterile alpha motif )

  8. XM_029829352.1 → XP_029685212.1  SAM and SH3 domain-containing protein 1-like isoform X7

    Conserved Domains (3) summary
    cd11967
    Location:445 → 501
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:298 → 443
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:520 → 585
    SAM_superfamily; SAM (Sterile alpha motif )

  9. XM_029829354.1 → XP_029685214.1  SAM and SH3 domain-containing protein 1-like isoform X8

    UniProtKB/TrEMBL
    A0A3B5KEK3
    Related
    ENSTRUP00000053825.2, ENSTRUT00000052409.2
    Conserved Domains (3) summary
    cd11967
    Location:655 → 711
    SH3_SASH1; Src homology 3 domain of SAM And SH3 Domain Containing Protein 1
    pfam12485
    Location:508 → 653
    SLY; Lymphocyte signaling adaptor protein
    cl15755
    Location:730 → 795
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
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