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smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [ Takifugu rubripes (torafugu) ]

Gene ID: 101062074, updated on 8-Mar-2024

Summary

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Gene symbol
smarcal1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
See related
Ensembl:ENSTRUG00000010701
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See smarcal1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 1 NC_042285.1 (20796764..20803754, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 1 NC_018890.1 (16577007..16583996, complement)

Chromosome 1 - NC_042285.1Genomic Context describing neighboring genes Neighboring gene enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase Neighboring gene UPF0524 protein C3orf70 homolog B Neighboring gene NME/NM23 family member 9 Neighboring gene membrane associated ring-CH-type finger 4b Neighboring gene collagen alpha-2(VI) chain-like Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042285.1 Reference fTakRub1.2 Primary Assembly

    Range
    20796764..20803754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011610615.2 → XP_011608917.2  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674NNB5, H2TQN7
    Related
    ENSTRUP00000074763.1, ENSTRUT00000061956.1
    Conserved Domains (3) summary
    COG0553
    Location:297 → 784
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18010
    Location:357 → 551
    DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
    pfam07443
    Location:164 → 217
    HARP; HepA-related protein (HARP)

  2. XM_029843538.1 → XP_029699398.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1

    UniProtKB/TrEMBL
    H2TQN7
    Related
    ENSTRUP00000026994.3, ENSTRUT00000027103.3
Nucleotide Protein
Heading Accession and Version

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