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LINC01806 long intergenic non-protein coding RNA 1806 [ Homo sapiens (human) ]

Gene ID: 100996579, updated on 17-Jun-2019

Summary

Official Symbol
LINC01806provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1806provided by HGNC
Primary source
HGNC:HGNC:52599
See related
Ensembl:ENSG00000227403
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 16.3), lymph node (RPKM 2.5) and 13 other tissues See more

Genomic context

See LINC01806 in Genome Data Viewer
Location:
2q24.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (161244739..161249050)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (162101250..162104228)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373719 Neighboring gene TRAF family member associated NFKB activator Neighboring gene uncharacterized LOC101929512 Neighboring gene VISTA enhancer hs416 Neighboring gene proteasome 26S subunit, non-ATPase 14 Neighboring gene matrix remodelling associated 7 pseudogene Neighboring gene VISTA enhancer hs2337

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110163.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AA828023, AC009299, AK027541, BG697582
  2. NR_110164.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AA828023, AC009299, AK027541
    Related
    ENST00000439050.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    161244739..161249050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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