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LINC01355 long intergenic non-protein coding RNA 1355 [ Homo sapiens (human) ]

Gene ID: 100996511, updated on 10-Oct-2023

Summary

Official Symbol
LINC01355provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1355provided by HGNC
Primary source
HGNC:HGNC:50584
See related
AllianceGenome:HGNC:50584
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HYPAL
Expression
Ubiquitous expression in skin (RPKM 4.3), prostate (RPKM 1.6) and 22 other tissues See more
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Genomic context

See LINC01355 in Genome Data Viewer
Location:
1p36.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (23281309..23285518, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (23114448..23118657, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (23607802..23612011, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene MPRA-validated peak115 silencer Neighboring gene MPRA-validated peak116 silencer Neighboring gene Sharpr-MPRA regulatory region 9970 Neighboring gene ribosomal protein L29 pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:23589770-23590604 Neighboring gene heterogeneous nuclear ribonucleoprotein R Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 409 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:23670710-23671294 Neighboring gene MIR1 retrotransposon enhancer-blocking element Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:23683836-23684671 Neighboring gene Sharpr-MPRA regulatory region 11811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 361 Neighboring gene ZNF436 antisense RNA 1 Neighboring gene zinc finger protein 436

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110616.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109936, BQ007283, BX113324

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    23281309..23285518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_014040926.1 Reference GRCh38.p14 PATCHES

    Range
    51288..55497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    23114448..23118657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)