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SMPD1 sphingomyelin phosphodiesterase 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100994517, updated on 3-Apr-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSPPAG00000031490
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 9 NC_073258.2 (8826802..8831484)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 11 NC_073260.1 (8790673..8795342)

Chromosome 9 - NC_073258.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134731188 Neighboring gene caveolae associated protein 3 Neighboring gene uncharacterized LOC129393340 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene hemopexin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073258.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    8826802..8831484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003819073.5 → XP_003819121.3  sphingomyelin phosphodiesterase isoform X1

  2. XM_034932042.3 → XP_034787933.3  sphingomyelin phosphodiesterase isoform X2

  3. XM_003819074.5 → XP_003819122.3  sphingomyelin phosphodiesterase isoform X3

    UniProtKB/TrEMBL
    A0A2R9AIC5

  4. XM_063608082.1 → XP_063464152.1  sphingomyelin phosphodiesterase isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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