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SMYD3 SET and MYND domain containing 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100990317, updated on 8-Mar-2024

Summary

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Gene symbol
SMYD3
Gene description
SET and MYND domain containing 3
See related
Ensembl:ENSPPAG00000037519
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (2624092..3383506)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (2841208..3607222)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 3B-like Neighboring gene transcription factor B2, mitochondrial Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin family member 26B Neighboring gene uncharacterized LOC134731265 Neighboring gene uncharacterized LOC134729015 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SMYD3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    2624092..3383506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003807985.5 → XP_003808033.1  histone-lysine N-methyltransferase SMYD3 isoform X1

    See identical proteins and their annotated locations for XP_003808033.1

    UniProtKB/TrEMBL
    A0A2R9BH65
    Related
    ENSPPAP00000028999.1
    Conserved Domains (2) summary
    pfam00856
    Location:201 → 239
    SET; SET domain
    pfam01753
    Location:49 → 87
    zf-MYND; MYND finger

  2. XM_008960083.3 → XP_008958331.1  histone-lysine N-methyltransferase SMYD3 isoform X3

    Conserved Domains (2) summary
    pfam00856
    Location:201 → 239
    SET; SET domain
    pfam01753
    Location:49 → 87
    zf-MYND; MYND finger

  3. XM_034950165.3 → XP_034806056.1  histone-lysine N-methyltransferase SMYD3 isoform X2

    Conserved Domains (2) summary
    cd19203
    Location:39 → 209
    SET_SMYD3; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 3 (SMYD3) and similar proteins
    pfam01753
    Location:1 → 28
    zf-MYND; MYND finger

  4. XM_057298969.2 → XP_057154952.1  histone-lysine N-methyltransferase SMYD3 isoform X2

  5. XM_034950172.3 → XP_034806063.1  histone-lysine N-methyltransferase SMYD3 isoform X2

    Conserved Domains (2) summary
    cd19203
    Location:39 → 209
    SET_SMYD3; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 3 (SMYD3) and similar proteins
    pfam01753
    Location:1 → 28
    zf-MYND; MYND finger

  6. XM_057298991.2 → XP_057154974.1  histone-lysine N-methyltransferase SMYD3 isoform X4

  7. XM_057298996.2 → XP_057154979.1  histone-lysine N-methyltransferase SMYD3 isoform X4

  8. XM_063608732.1 → XP_063464802.1  histone-lysine N-methyltransferase SMYD3 isoform X4

Nucleotide Protein
Heading Accession and Version

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