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ZNF638 zinc finger protein 638 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100986153, updated on 3-Apr-2024

Summary

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Gene symbol
ZNF638
Gene description
zinc finger protein 638
See related
Ensembl:ENSPPAG00000039298
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 12 NC_073261.2 (54957080..55112553, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 2A NC_073250.1 (54959823..55115296, complement)

Chromosome 12 - NC_073261.2Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 26 subfamily B member 1 Neighboring gene dysferlin Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC100968877 Neighboring gene poly(A) binding protein interacting protein 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 638

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073261.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    54957080..55112553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008960274.3 → XP_008958522.1  zinc finger protein 638 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BWY0
    Conserved Domains (4) summary
    smart00451
    Location:1998 → 2030
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1115 → 1188
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:782 → 857
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    pfam07382
    Location:847 → 946
    HC2; Histone H1-like nucleoprotein HC2

  2. XM_008960272.4 → XP_008958520.1  zinc finger protein 638 isoform X1

    UniProtKB/TrEMBL
    A0A2R9BWY0
    Conserved Domains (4) summary
    smart00451
    Location:2033 → 2065
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1115 → 1188
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:782 → 857
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    pfam07382
    Location:847 → 946
    HC2; Histone H1-like nucleoprotein HC2

  3. XM_055107806.1 → XP_054963781.1  zinc finger protein 638 isoform X4

  4. XM_008960275.5 → XP_008958523.1  zinc finger protein 638 isoform X3

    See identical proteins and their annotated locations for XP_008958523.1

    UniProtKB/TrEMBL
    A0A2R9BU35, A0A2R9BWY0
    Related
    ENSPPAP00000032961.1
    Conserved Domains (4) summary
    smart00451
    Location:1927 → 1959
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1009 → 1082
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:676 → 751
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    pfam07382
    Location:741 → 840
    HC2; Histone H1-like nucleoprotein HC2

  5. XM_055107804.2 → XP_054963779.1  zinc finger protein 638 isoform X3

    UniProtKB/TrEMBL
    A0A2R9BU35

  6. XM_055107805.1 → XP_054963780.1  zinc finger protein 638 isoform X3

    UniProtKB/TrEMBL
    A0A2R9BU35
Nucleotide Protein
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