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RFX3 regulatory factor X3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100974143, updated on 6-Jun-2024

Summary

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Gene symbol
RFX3
Gene description
regulatory factor X3
See related
Ensembl:ENSPPAG00000039978
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RFX3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 11 NC_073260.2 (121059425..121367498)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 9 NC_073258.1 (121065243..121373442)

Chromosome 11 - NC_073260.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134728589 Neighboring gene GLIS family zinc finger 3 Neighboring gene uncharacterized LOC106635088 Neighboring gene uncharacterized LOC134728549 Neighboring gene uncharacterized LOC103786919 Neighboring gene histone-arginine methyltransferase CARM1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RFX3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073260.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    121059425..121367498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063594035.1 → XP_063450105.1  transcription factor RFX3 isoform X7

    UniProtKB/TrEMBL
    A0A2R9BX95

  2. XM_008976997.4 → XP_008975245.1  transcription factor RFX3 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BX64
    Conserved Domains (2) summary
    pfam02257
    Location:184 → 256
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:51 → 134
    RFX1_trans_act; RFX1 transcription activation region

  3. XM_055092194.2 → XP_054948169.1  transcription factor RFX3 isoform X8

    UniProtKB/TrEMBL
    A0A2R9BX95

  4. XM_055092195.2 → XP_054948170.1  transcription factor RFX3 isoform X9

    UniProtKB/TrEMBL
    A0A2R9BX95

  5. XM_055092197.3 → XP_054948172.1  transcription factor RFX3 isoform X11

    UniProtKB/TrEMBL
    A0A2R9BX64

  6. XM_034967073.3 → XP_034822964.1  transcription factor RFX3 isoform X3

    UniProtKB/TrEMBL
    A0A2R9BX64
    Conserved Domains (2) summary
    pfam02257
    Location:194 → 266
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:61 → 144
    RFX1_trans_act; RFX1 transcription activation region

  7. XM_055092196.3 → XP_054948171.1  transcription factor RFX3 isoform X10

    UniProtKB/TrEMBL
    A0A2R9BX64

  8. XM_055092191.1 → XP_054948166.1  transcription factor RFX3 isoform X5

    UniProtKB/TrEMBL
    A0A2R9BX95

  9. XM_055092192.1 → XP_054948167.1  transcription factor RFX3 isoform X6

    UniProtKB/TrEMBL
    A0A2R9BX64, A0A2R9C6Y3

  10. XM_034967072.3 → XP_034822963.1  transcription factor RFX3 isoform X1

    UniProtKB/TrEMBL
    A0A2R9BX64
    Conserved Domains (2) summary
    pfam02257
    Location:190 → 262
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:57 → 140
    RFX1_trans_act; RFX1 transcription activation region

  11. XM_055092190.2 → XP_054948165.1  transcription factor RFX3 isoform X4

    UniProtKB/TrEMBL
    A0A2R9BX64

  12. XM_055092193.1 → XP_054948168.1  transcription factor RFX3 isoform X6

    UniProtKB/TrEMBL
    A0A2R9BX64, A0A2R9C6Y3
Nucleotide Protein
Heading Accession and Version

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