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USP4 ubiquitin specific peptidase 4 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100933028, updated on 8-Mar-2024

Summary

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Gene symbol
USP4
Gene description
ubiquitin specific peptidase 4
See related
Ensembl:ENSSHAG00000016024
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (85189356..85257310)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823593.1 (1995539..2060319, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene ras homolog family member A Neighboring gene glutathione peroxidase 1 Neighboring gene chromosome 1 C3orf62 homolog Neighboring gene interactor of HORMAD1 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    85189356..85257310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031959259.1 → XP_031815119.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

    UniProtKB/TrEMBL
    G3WTX4
    Related
    ENSSHAP00000018879.2, ENSSHAT00000019035.2
    Conserved Domains (1) summary
    COG5560
    Location:47 → 935
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

  2. XM_031959266.1 → XP_031815126.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

    UniProtKB/TrEMBL
    G3WTX3
    Related
    ENSSHAP00000018878.2, ENSSHAT00000019034.2
    Conserved Domains (1) summary
    COG5560
    Location:47 → 890
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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