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LOC100921928 integrin alpha-D [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100921928, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100921928
Gene description
integrin alpha-D
See related
Ensembl:ENSSHAG00000014262
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
ITGAD
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Genomic context

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Location:
chromosome: 1
Exon count:
30
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (219479259..219505772)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823493.1 (1430536..1456051, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha M Neighboring gene integrin subunit alpha X Neighboring gene cytochrome c oxidase subunit 6A2, mitochondrial Neighboring gene zinc finger protein 660-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-D
Names
integrin subunit alpha D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    219479259..219505772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023497318.2 → XP_023353086.1  integrin alpha-D isoform X2

    UniProtKB/TrEMBL
    A0A7N4PIA9, G3WMV9
    Related
    ENSSHAP00000016764.2, ENSSHAT00000016906.2
    Conserved Domains (4) summary
    smart00191
    Location:452 → 507
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00357
    Location:1096 → 1109
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:614 → 973
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:150 → 324
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_003761338.4 → XP_003761386.1  integrin alpha-D isoform X1

    UniProtKB/TrEMBL
    A0A7N4PIA9, G3WMV8
    Related
    ENSSHAP00000016763.1, ENSSHAT00000016905.2
    Conserved Domains (4) summary
    smart00191
    Location:452 → 507
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00357
    Location:1122 → 1135
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:614 → 1025
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:150 → 324
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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