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BANCR BRAF-activated non-protein coding RNA [ Homo sapiens (human) ]

Gene ID: 100885775, updated on 6-Apr-2021

Summary

Official Symbol
BANCRprovided by HGNC
Official Full Name
BRAF-activated non-protein coding RNAprovided by HGNC
Primary source
HGNC:HGNC:43877
See related
Ensembl:ENSG00000278910
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00586
Summary
This gene produces a long non-coding RNA that plays a role in tumor progression and epithelial to mesenchymal transition. This transcript acts through the MAP kinase signaling pathway. [provided by RefSeq, Dec 2017]
Expression
Biased expression in heart (RPKM 8.5), lung (RPKM 0.8) and 1 other tissue See more
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Genomic context

See BANCR in Genome Data Viewer
Location:
9q21.11-q21.12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (69296681..69307056, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (71911597..71921972, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene Friedreich ataxia repeat instability region Neighboring gene frataxin Neighboring gene tight junction protein 2 Neighboring gene family with sequence similarity 189 member A2 Neighboring gene uncharacterized LOC105376074 Neighboring gene 9q21.12 proximal LINE-mediated recombination region Neighboring gene amyloid beta precursor protein binding family A member 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047671.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AA442164, BG193679, W58600
    Related
    ENST00000624238.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    69296681..69307056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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