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ATP2B2-IT2 ATP2B2 intronic transcript 2 [ Homo sapiens (human) ]

Gene ID: 100874325, updated on 23-Nov-2021

Summary

Official Symbol
ATP2B2-IT2provided by HGNC
Official Full Name
ATP2B2 intronic transcript 2provided by HGNC
Primary source
HGNC:HGNC:41310
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See ATP2B2-IT2 in Genome Data Viewer
Location:
3p25.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (10626015..10626807, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (10667700..10668492, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 2 Neighboring gene Sharpr-MPRA regulatory region 15222 Neighboring gene Sharpr-MPRA regulatory region 781 Neighboring gene Sharpr-MPRA regulatory region 1605 Neighboring gene long intergenic non-protein coding RNA 606

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • ATP2B2 intronic transcript 2 (non-protein coding)

Clone Names

  • AC018502.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046766.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI126440, BX110985

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    10626015..10626807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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