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NRG1-IT3 NRG1 intronic transcript 3 [ Homo sapiens (human) ]

Gene ID: 100874286, updated on 10-Oct-2023

Summary

Official Symbol
NRG1-IT3provided by HGNC
Official Full Name
NRG1 intronic transcript 3provided by HGNC
Primary source
HGNC:HGNC:43635
See related
Ensembl:ENSG00000254049 AllianceGenome:HGNC:43635
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See NRG1-IT3 in Genome Data Viewer
Location:
8p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (32440746..32442725)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (32721691..32723670)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (32298262..32300241)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene neuregulin 1 Neighboring gene RNA, 5S ribosomal pseudogene 263 Neighboring gene Sharpr-MPRA regulatory region 6165 Neighboring gene NANOG hESC enhancer GRCh37_chr8:32265698-32266280 Neighboring gene uncharacterized LOC105379361 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:32490269-32491468 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:32500376-32501575 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:32504369-32504970 Neighboring gene uncharacterized LOC128092250 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579026-32579596 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579597-32580167 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:32617179-32618378 Neighboring gene RNA, U6 small nuclear 663, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • NRG1 intronic transcript 3 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047475.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068359
    Related
    ENST00000519023.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    32440746..32442725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    32721691..32723670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)