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sip3 septin interacting protein 3 [ Bombyx mori (domestic silkworm) ]

Gene ID: 100862840, updated on 6-Jun-2024

Summary

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Gene symbol
sip3
Gene description
septin interacting protein 3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 25 NC_085131.1 (6166496..6176211)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 25 NC_051382.1 (6151367..6161075)

Chromosome 25 - NC_085131.1Genomic Context describing neighboring genes Neighboring gene AT-rich interactive domain-containing protein 4B Neighboring gene pre-mRNA processing factor 39 Neighboring gene ETS-like protein pointed Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene ATP synthase subunit d, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
septin interacting protein 3; synoviolin-like protein
Names
E3 ubiquitin-protein ligase HRD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257061.1 → NP_001243990.1  septin interacting protein 3

    See identical proteins and their annotated locations for NP_001243990.1

    Status: PROVISIONAL

    Source sequence(s)
    JN581663
    UniProtKB/TrEMBL
    A0A7R7G312, G9I6Y0
    Conserved Domains (1) summary
    COG5243
    Location:4 → 297
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085131.1 Reference ASM3026992v2 Primary Assembly

    Range
    6166496..6176211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062675966.1 → XP_062531950.1  synoviolin-like protein isoform X2

    UniProtKB/TrEMBL
    A0A7R7G312

  2. XM_038020176.2 → XP_037876104.1  synoviolin-like protein isoform X1

    UniProtKB/TrEMBL
    A0A7R7G312, A0A8R2R8C1
    Conserved Domains (1) summary
    COG5243
    Location:4 → 332
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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