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CHD5 chromodomain helicase DNA binding protein 5 [ Gallus gallus (chicken) ]

Gene ID: 100857108, updated on 17-Aug-2024

Summary

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Symbol
CHD5provided by CGNC
Full Name
chromodomain helicase DNA binding protein 5provided by CGNC
Primary source
CGNC:66059
See related
Ensembl:ENSGALG00010019284
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CHD3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
42
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (633493..661497)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (665129..693171)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 207 Neighboring gene ribosomal protein L22 Neighboring gene uncharacterized LOC121107367 Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 2 Neighboring gene nephrocystin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 5; LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5
Names
chromodomain helicase DNA binding protein 3
XP_024998451.2
XP_040544883.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    633493..661497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025142683.3 → XP_024998451.2  LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z9X1, A0A8V0ZHE4
    Related
    ENSGALP00010027984.1, ENSGALT00010047197.1
    Conserved Domains (6) summary
    PLN03142
    Location:692 → 1210
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:340 → 382
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:412 → 454
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:583 → 637
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:459 → 538
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1386 → 1525
    DUF1086; Domain of Unknown Function (DUF1086)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    665129..693171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040688949.2 → XP_040544883.1  LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z9X1
    Conserved Domains (6) summary
    PLN03142
    Location:692 → 1210
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:340 → 382
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:412 → 454
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:583 → 637
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:459 → 538
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    pfam06461
    Location:1386 → 1525
    DUF1086; Domain of Unknown Function (DUF1086)
Nucleotide Protein Strain
Heading Accession and Version

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