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HDT1 histone deacetylase HDT1-like [ Glycine max (soybean) ]

Gene ID: 100812152, updated on 31-May-2023

Summary

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Gene symbol
HDT1
Gene description
histone deacetylase HDT1-like
Locus tag
GLYMA_03G190700v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmHDT1
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Genomic context

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See HDT1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (41298569..41303584, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (40130914..40135929, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene enolase Neighboring gene splicing factor U2af small subunit B Neighboring gene protein ROS1A Neighboring gene bystin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean. Yang C, et al. BMC Plant Biol, 2018 Oct 11. PMID 30305032, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
histone deacetylase HDT1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001253930.1 → NP_001240859.1  histone deacetylase HDT1-like

    See identical proteins and their annotated locations for NP_001240859.1

    Status: PROVISIONAL

    Source sequence(s)
    BT095167
    UniProtKB/TrEMBL
    C6TC87
    Conserved Domains (2) summary
    pfam13912
    Location:262 → 286
    zf-C2H2_6; C2H2-type zinc finger
    pfam17800
    Location:3 → 93
    NPL; Nucleoplasmin-like domain

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41298569..41303584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases