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SDP6 glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [ Glycine max (soybean) ]

Gene ID: 100808564, updated on 11-Apr-2024

Summary

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Gene symbol
SDP6
Gene description
glycerol-3-phosphate dehydrogenase SDP6, mitochondrial
Locus tag
GLYMA_02G165500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GPDH12; GmSDP6
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (26326183..26334865)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (24443572..24452273)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing ATP-dependent RNA helicase prp5 Neighboring gene uncharacterized LOC102668212 Neighboring gene uncharacterized LOC100817634 Neighboring gene putative uncharacterized protein DDB_G0282129 Neighboring gene uncharacterized LOC100814977

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DA-6 promotes germination and seedling establishment from aged soybean seeds by mediating fatty acid metabolism and glycometabolism. Zhou W, et al. J Exp Bot, 2019 Jan 1. PMID 29982626, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerol-3-phosphate dehydrogenase (quinone) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerol-3-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerol-3-phosphate dehydrogenase SDP6, mitochondrial
Names
mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    26326183..26334865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006575128.4 → XP_006575191.1  glycerol-3-phosphate dehydrogenase SDP6, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006575191.1

    UniProtKB/TrEMBL
    A0A0R0L3E1, I1JFY8
    Conserved Domains (1) summary
    PLN02464
    Location:1 → 629
    PLN02464; glycerol-3-phosphate dehydrogenase

  2. XM_003518980.5 → XP_003519028.1  glycerol-3-phosphate dehydrogenase SDP6, mitochondrial isoform X2

    See identical proteins and their annotated locations for XP_003519028.1

    UniProtKB/TrEMBL
    A0A0R0L3E1, I1JFY8
    Conserved Domains (1) summary
    PLN02464
    Location:1 → 629
    PLN02464; glycerol-3-phosphate dehydrogenase

  3. XM_041007122.1 → XP_040863056.1  glycerol-3-phosphate dehydrogenase SDP6, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A0R0L554
    Conserved Domains (1) summary
    PLN02464
    Location:1 → 535
    PLN02464; glycerol-3-phosphate dehydrogenase
Nucleotide Protein
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