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LOC100794443 BTB/POZ domain-containing protein [ Glycine max (soybean) ]

Gene ID: 100794443, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100794443
Gene description
BTB/POZ domain-containing protein
Locus tag
GLYMA_04G244900v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmBTB/POZ
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (50065616..50068280)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (51244286..51246990)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene gibberellin 20 oxidase 2 Neighboring gene uncharacterized serine-rich protein C215.13 Neighboring gene putative calcium-binding protein Neighboring gene UDP-sugar pyrophosphorylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GmBTB/POZ, a novel BTB/POZ domain-containing nuclear protein, positively regulates the response of soybean to Phytophthora sojae infection. Zhang C, et al. Mol Plant Pathol, 2019 Jan. PMID 30113770, Free PMC Article
  2. Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. Umezawa T, et al. DNA Res, 2008 Dec. PMID 18927222, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GmBTB/POZ plays a positive role in P. sojae resistance and the defence response in soybean via a process that might be dependent on salicylic acid.[GmBTB/POZ]
    Title: GmBTB/POZ, a novel BTB/POZ domain-containing nuclear protein, positively regulates the response of soybean to Phytophthora sojae infection.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001372110.1 → NP_001359039.1  BTB/POZ domain-containing protein

    Status: VALIDATED

    Source sequence(s)
    ACUP04001612, BW659818
    UniProtKB/TrEMBL
    I1JZ08
    Conserved Domains (1) summary
    cd18186
    Location:87 → 171
    BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    50065616..50068280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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