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LOC100793534 E3 ubiquitin-protein ligase UPL4 [ Glycine max (soybean) ]

Gene ID: 100793534, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100793534
Gene description
E3 ubiquitin-protein ligase UPL4
Locus tag
GLYMA_10G049100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100793534 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (4392609..4401501)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (4425276..4434199)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g67720 Neighboring gene nuclear transcription factor Y subunit B-10 Neighboring gene pentatricopeptide repeat-containing protein At3g09650, chloroplastic Neighboring gene uncharacterized LOC102668677

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase UPL4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4392609..4401501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006588692.4 → XP_006588755.1  E3 ubiquitin-protein ligase UPL4

    See identical proteins and their annotated locations for XP_006588755.1

    UniProtKB/TrEMBL
    I1L8R7
    Conserved Domains (1) summary
    cd00078
    Location:1161 → 1555
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_006588688.4 → XP_006588751.1  E3 ubiquitin-protein ligase UPL4

    See identical proteins and their annotated locations for XP_006588751.1

    UniProtKB/TrEMBL
    I1L8R7
    Conserved Domains (1) summary
    cd00078
    Location:1161 → 1555
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  3. XM_006588690.4 → XP_006588753.1  E3 ubiquitin-protein ligase UPL4

    See identical proteins and their annotated locations for XP_006588753.1

    UniProtKB/TrEMBL
    I1L8R7
    Conserved Domains (1) summary
    cd00078
    Location:1161 → 1555
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  4. XM_026124030.2 → XP_025979815.1  E3 ubiquitin-protein ligase UPL4

    UniProtKB/TrEMBL
    I1L8R7
    Conserved Domains (1) summary
    cd00078
    Location:1161 → 1555
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  5. XM_006588691.4 → XP_006588754.1  E3 ubiquitin-protein ligase UPL4

    See identical proteins and their annotated locations for XP_006588754.1

    UniProtKB/TrEMBL
    I1L8R7
    Conserved Domains (1) summary
    cd00078
    Location:1161 → 1555
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
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