U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100784961 elongator complex protein 3 [ Glycine max (soybean) ]

Gene ID: 100784961, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100784961
Gene description
elongator complex protein 3
Locus tag
GLYMA_06G173000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (14480063..14485247)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (14526390..14531661)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene ubiquitin-like-specific protease 1C Neighboring gene telomere length regulation protein TEL2 homolog Neighboring gene coproporphyrinogen-III oxidase-like Neighboring gene kelch domain-containing protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of elongator holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
elongator complex protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    14480063..14485247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003526929.5 → XP_003526977.1  elongator complex protein 3

    UniProtKB/TrEMBL
    I1KC74
    Conserved Domains (4) summary
    cd01335
    Location:112 → 359
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    TIGR01211
    Location:53 → 562
    ELP3; radical SAM enzyme/protein acetyltransferase, ELP3 family
    pfam00583
    Location:509 → 552
    Acetyltransf_1; Acetyltransferase (GNAT) family
    pfam16199
    Location:330 → 408
    Radical_SAM_C; Radical_SAM C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases