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Casc3 CASC3 exon junction complex subunit [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100727378, updated on 8-Mar-2024

Summary

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Gene symbol
Casc3
Gene description
CASC3 exon junction complex subunit
See related
Ensembl:ENSCPOG00000015139
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Casc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (92749176..92767229)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176366.1 (10673791..10691852)

NW_026947489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111755951 Neighboring gene MSL complex subunit 1 Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene WAS/WASL interacting protein family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CASC3
Names
cancer susceptibility 3
cancer susceptibility candidate 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947489.1 Reference mCavPor4.1

    Range
    92749176..92767229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063251498.1 → XP_063107568.1  protein CASC3 isoform X3

  2. XM_005002420.4 → XP_005002477.1  protein CASC3 isoform X1

    Conserved Domains (1) summary
    smart01044
    Location:141 → 243
    Btz; CASC3/Barentsz eIF4AIII binding

  3. XM_003466936.5 → XP_003466984.1  protein CASC3 isoform X2

    UniProtKB/TrEMBL
    H0VSN3
    Related
    ENSCPOP00000013648.2
    Conserved Domains (1) summary
    smart01044
    Location:141 → 243
    Btz; CASC3/Barentsz eIF4AIII binding
Nucleotide Protein
Heading Accession and Version

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