Crtac1 cartilage acidic protein 1 [Cavia porcellus (domestic guinea pig)] - Gene

Summary

Gene symbol: Crtac1
Gene description: cartilage acidic protein 1
See related: Ensembl:ENSCPOG00000007832
Gene type: protein coding
RefSeq status: MODEL
Organism: Cavia porcellus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs: human mouse all
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Genomic context

Location:: chromosome: Un

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	mCavPor4.1 (GCF_034190915.1)	Unplaced Scaffold	NW_026947485.1 (109320464..109476193)
103	previous assembly	Cavpor3.0 (GCF_000151735.1)	Unplaced Scaffold	NT_176418.1 (31512982..31658791, complement)

NW_026947485.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-32394 (e-PCR)
- UniSTS:1569

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in axonal fasciculation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cartilage acidic protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

NW_026947485.1 Reference mCavPor4.1

Range

109320464..109476193

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063245092.1 → XP_063101162.1 cartilage acidic protein 1 isoform X2
XM_003479565.5 → XP_003479613.2 cartilage acidic protein 1 isoform X3

Conserved Domains (3) summary

pfam07593
Location:460 → 512

UnbV_ASPIC; ASPIC and UnbV

pfam07645
Location:559 → 605

EGF_CA; Calcium-binding EGF domain

pfam13517
Location:299 → 363

VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
XM_013143529.3 → XP_012998983.1 cartilage acidic protein 1 isoform X4

Conserved Domains (3) summary

pfam07593
Location:460 → 512

UnbV_ASPIC; ASPIC and UnbV

pfam07645
Location:559 → 605

EGF_CA; Calcium-binding EGF domain

pfam13517
Location:299 → 363

VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
XM_023561602.2 → XP_023417370.1 cartilage acidic protein 1 isoform X5

Conserved Domains (3) summary

pfam07593
Location:460 → 512

UnbV_ASPIC; ASPIC and UnbV

pfam07645
Location:559 → 605

EGF_CA; Calcium-binding EGF domain

pfam13517
Location:299 → 363

VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
XM_005008056.4 → XP_005008113.1 cartilage acidic protein 1 isoform X1

UniProtKB/TrEMBL

H0VAZ3

Related

ENSCPOP00000007053.3

Conserved Domains (3) summary

pfam07593
Location:460 → 512

UnbV_ASPIC; ASPIC and UnbV

pfam07645
Location:559 → 605

EGF_CA; Calcium-binding EGF domain

pfam13517
Location:299 → 363

VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
XM_063245093.1 → XP_063101163.1 cartilage acidic protein 1 isoform X6