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LOC100632187 histone deacetylase 6-like [ Amphimedon queenslandica ]

Gene ID: 100632187, updated on 25-Jan-2024

Summary

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Gene symbol
LOC100632187
Gene description
histone deacetylase 6-like
See related
EnsemblRapid:LOC100632187
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546244.1 (1020103..1023387)

NW_003546244.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100631935 Neighboring gene WD repeat-containing protein 49-like Neighboring gene DDB1- and CUL4-associated factor 13-like Neighboring gene 40S ribosomal protein S23 Neighboring gene dedicator of cytokinesis protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546244.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546244.1 Reference v1.0 Primary Assembly

    Range
    1020103..1023387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003382707.2 → XP_003382755.1  histone deacetylase 6-like

    UniProtKB/TrEMBL
    A0A1X7VVD8
    Related
    XP_003382755.1, XM_003382707.2
    Conserved Domains (2) summary
    cd10003
    Location:43 → 391
    HDAC6-dom2; Histone deacetylase 6, domain 2
    pfam02148
    Location:529 → 591
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein
Heading Accession and Version

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