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Mir3017a microRNA mir-3017a [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100631043, updated on 16-Feb-2023

Summary

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Gene symbol
Mir3017a
Gene description
microRNA mir-3017a
See related
EnsemblRapid:GeneID_100631043 miRBase:MI0013959
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Also known as
api-mir-3017a
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

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See Mir3017a in Genome Data Viewer
Location:
chromosome: A2
Exon count:
1
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (110122655..110122709)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384878.1 (15608..15662)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100575943 Neighboring gene uncharacterized LOC100572351 Neighboring gene uncharacterized LOC115034072 Neighboring gene acyl-CoA Delta(11) desaturase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. Legeai F, et al. BMC Genomics, 2010 May 5. PMID 20444247, Free PMC Article
  2. miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381832, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • microRNA 3017a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040180.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    SDIB01021919
    Related
    NR_040180.1

RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    110122655..110122709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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