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LOC100535104 von Willebrand factor A domain-containing protein 5A [ Danio rerio (zebrafish) ]

Gene ID: 100535104, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100535104
Gene description
von Willebrand factor A domain-containing protein 5A
See related
Ensembl:ENSDARG00000010183
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

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Location:
chromosome: 25
Exon count:
66
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (4953427..5013347)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (4827156..4851572)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-340j19.1 Neighboring gene von Willebrand factor A domain-containing protein 5A Neighboring gene histone deacetylase 10 Neighboring gene parvin, beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
von Willebrand factor A domain-containing protein 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    4953427..5013347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297740.4 → XP_009296015.1  von Willebrand factor A domain-containing protein 5A isoform X5

    UniProtKB/TrEMBL
    A0A8M3AZF0
    Conserved Domains (3) summary
    TIGR03788
    Location:18 → 600
    marine_srt_targ; marine proteobacterial sortase target protein
    pfam08487
    Location:16 → 126
    VIT; Vault protein inter-alpha-trypsin domain
    cl00057
    Location:278 → 453
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_068217481.1 → XP_068073582.1  von Willebrand factor A domain-containing protein 5A isoform X6

  3. XM_068217479.1 → XP_068073580.1  von Willebrand factor A domain-containing protein 5A isoform X3

  4. XM_068217480.1 → XP_068073581.1  von Willebrand factor A domain-containing protein 5A isoform X4

  5. XM_068217482.1 → XP_068073583.1  von Willebrand factor A domain-containing protein 5A isoform X7

  6. XM_021470769.2 → XP_021326444.2  von Willebrand factor A domain-containing protein 5A isoform X8

    Related
    ENSDARP00000127559.1, ENSDART00000155537.3

  7. XM_017354208.3 → XP_017209697.2  von Willebrand factor A domain-containing protein 5A isoform X1

    UniProtKB/TrEMBL
    A0A8M6YYH8

  8. XM_017354209.3 → XP_017209698.2  von Willebrand factor A domain-containing protein 5A isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z531
Nucleotide Protein
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