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arpc4l actin related protein 2/3 complex, subunit 4, like [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528727, updated on 24-Aug-2024

Summary

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Gene symbol
arpc4l
Gene description
actin related protein 2/3 complex, subunit 4, like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
arpc4
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 21 NC_030436.2 (18683176..18685936)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 21 NC_030436.1 (2431246..2434006, complement)

Chromosome 21 - NC_030436.2Genomic Context describing neighboring genes Neighboring gene RAB7a, member RAS oncogene family Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific Neighboring gene transcriptional adaptor 3 (NGG1 homolog, yeast)-like Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4a Neighboring gene MAPK activated protein kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin related protein 2/3 complex, subunit 4, like
Names
actin-related protein 3-feb complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200997.1 → NP_001187926.1  actin related protein 2/3 complex, subunit 4, like

    See identical proteins and their annotated locations for NP_001187926.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589359
    UniProtKB/TrEMBL
    E3TG73
    Conserved Domains (1) summary
    pfam05856
    Location:1 → 166
    ARPC4; ARP2/3 complex 20 kDa subunit (ARPC4)

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030436.2 Reference Coco_2.0 Primary Assembly

    Range
    18683176..18685936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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