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GEMIN2 gem nuclear organelle associated protein 2 [ Sus scrofa (pig) ]

Gene ID: 100525675, updated on 17-Aug-2024

Summary

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Official Symbol
GEMIN2provided by VGNC
Official Full Name
gem nuclear organelle associated protein 2provided by VGNC
Primary source
VGNC:VGNC:88411
See related
Ensembl:ENSSSCG00000004985
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 7.2), kidney (RPKM 6.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (169676152..169701475)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (188436304..188461158, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 2-like Neighboring gene cysteine and glycine-rich protein 2 pseudogene Neighboring gene uncharacterized LOC100627270 Neighboring gene trafficking protein particle complex subunit 6B Neighboring gene pinin, desmosome associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gem-associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    169676152..169701475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003121777.5 → XP_003121825.1  gem-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A480PNK5, A0A4X1SVZ2, A0A8D1L5P9, F1SIQ2
    Related
    ENSSSCP00000005361.5, ENSSSCT00000005498.5
    Conserved Domains (1) summary
    pfam04938
    Location:33 → 273
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  2. XM_005659905.3 → XP_005659962.1  gem-associated protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A4X1SVN7
    Related
    ENSSSCP00000066749.2, ENSSSCT00000070976.2
    Conserved Domains (1) summary
    pfam04938
    Location:33 → 246
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  3. XM_005659903.3 → XP_005659960.1  gem-associated protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0VTU5
    Conserved Domains (1) summary
    pfam04938
    Location:33 → 269
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  4. XM_005659904.3 → XP_005659961.1  gem-associated protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1SUA2, A0A8W4FAH4
    Related
    ENSSSCP00000075835.1, ENSSSCT00000096953.1
    Conserved Domains (1) summary
    pfam04938
    Location:33 → 250
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)

  5. XM_021101032.1 → XP_020956691.1  gem-associated protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A4X1SVN7
    Conserved Domains (1) summary
    pfam04938
    Location:34 → 223
    SIP1; Survival motor neuron (SMN) interacting protein 1 (SIP1)
Nucleotide Protein
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