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TMEM138 transmembrane protein 138 [ Sus scrofa (pig) ]

Gene ID: 100519941, updated on 8-Mar-2024

Summary

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Official Symbol
TMEM138provided by VGNC
Official Full Name
transmembrane protein 138provided by VGNC
Primary source
VGNC:VGNC:94086
See related
Ensembl:ENSSSCG00000037843
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 9.0), kidney (RPKM 6.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TMEM138 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (10134866..10143049, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (9682246..9689522, complement)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene cleavage and polyadenylation specific factor 7 Neighboring gene transmembrane protein 216 Neighboring gene cytochrome b561 family member A3 Neighboring gene uncharacterized LOC106509335 Neighboring gene triokinase and FMN cyclase Neighboring gene damage specific DNA binding protein 1 Neighboring gene uncharacterized LOC110259248

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 138

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    10134866..10143049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021082949.1 → XP_020938608.1  transmembrane protein 138 isoform X1

    UniProtKB/TrEMBL
    A0A480W4G0, A0A4X1VH79, A0A8D1J2Z3, A0A8D1QG78
    Related
    ENSSSCP00000054631.1, ENSSSCT00000036815.2
    Conserved Domains (1) summary
    pfam14935
    Location:38 → 156
    TMEM138; Transmembrane protein 138

  2. XM_003122640.4 → XP_003122688.1  transmembrane protein 138 isoform X1

    See identical proteins and their annotated locations for XP_003122688.1

    UniProtKB/TrEMBL
    A0A480W4G0, A0A4X1VH79, A0A8D1J2Z3, A0A8D1QG78
    Conserved Domains (1) summary
    pfam14935
    Location:38 → 156
    TMEM138; Transmembrane protein 138

  3. XM_005660823.3 → XP_005660880.1  transmembrane protein 138 isoform X1

    See identical proteins and their annotated locations for XP_005660880.1

    UniProtKB/TrEMBL
    A0A480W4G0, A0A4X1VH79, A0A8D1J2Z3, A0A8D1QG78
    Conserved Domains (1) summary
    pfam14935
    Location:38 → 156
    TMEM138; Transmembrane protein 138

  4. XM_021082950.1 → XP_020938609.1  transmembrane protein 138 isoform X2

    Conserved Domains (1) summary
    pfam14935
    Location:30 → 142
    TMEM138; Transmembrane protein 138

  5. XM_021082951.1 → XP_020938610.1  transmembrane protein 138 isoform X3

    Conserved Domains (1) summary
    pfam14935
    Location:1 → 98
    TMEM138; Transmembrane protein 138
Nucleotide Protein
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