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GMDS-DT GMDS divergent transcript [ Homo sapiens (human) ]

Gene ID: 100508120, updated on 12-Oct-2019

Summary

Official Symbol
GMDS-DTprovided by HGNC
Official Full Name
GMDS divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48993
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GMDS-AS1
Expression
Ubiquitous expression in thyroid (RPKM 1.9), prostate (RPKM 1.4) and 25 other tissues See more

Genomic context

See GMDS-DT in Genome Data Viewer
Location:
6p25.3-p25.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (2245753..2413591)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (2245987..2413825)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986513 Neighboring gene GDP-mannose 4,6-dehydratase Neighboring gene uncharacterized LOC107986512 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 28 Neighboring gene long intergenic non-protein coding RNA 1600 Neighboring gene long intergenic non-protein coding RNA 2521 Neighboring gene Sharpr-MPRA regulatory region 3200 Neighboring gene myosin light chain kinase family member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • GMDS antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046229.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX342557, CA413374, CN395927, CR739457, CR933638

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    2245753..2413591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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