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SOX21-AS1 SOX21 antisense divergent transcript 1 [ Homo sapiens (human) ]

Gene ID: 100507533, updated on 5-Nov-2019

Summary

Official Symbol
SOX21-AS1provided by HGNC
Official Full Name
SOX21 antisense divergent transcript 1provided by HGNC
Primary source
HGNC:HGNC:39807
See related
Ensembl:ENSG00000227640
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 6.7), skin (RPKM 3.6) and 3 other tissues See more
Orthologs

Genomic context

See SOX21-AS1 in Genome Data Viewer
Location:
13q32.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (94712716..94715945)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927248 Neighboring gene VISTA enhancer hs488 Neighboring gene uncharacterized LOC112268114 Neighboring gene SRY-box transcription factor 21 Neighboring gene uncharacterized LOC101927284 Neighboring gene ribosomal protein L21 pseudogene 112 Neighboring gene bromodomain containing 7 pseudogene 5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000013.11 Chromosome 13 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • SOX21 antisense RNA 1 (head to head)
  • SOX21 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ30897

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046514.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137061
    Related
    ENST00000438290.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    94712716..94715945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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