Format

Send to:

Choose Destination

TARID TCF21 antisense RNA inducing promoter demethylation [ Homo sapiens (human) ]

Gene ID: 100507308, updated on 25-Jan-2022

Summary

Official Symbol
TARIDprovided by HGNC
Official Full Name
TCF21 antisense RNA inducing promoter demethylationprovided by HGNC
Primary source
HGNC:HGNC:50506
See related
Ensembl:ENSG00000227954 MIM:616058; AllianceGenome:HGNC:50506
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EYA4-AS1
Expression
Broad expression in placenta (RPKM 2.4), ovary (RPKM 2.4) and 16 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TARID in Genome Data Viewer
Location:
6q23.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (133502252..133889006, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (133823390..134210144, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 326 Neighboring gene MT-CYB pseudogene 4 Neighboring gene EYA transcriptional coactivator and phosphatase 4 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 21 Neighboring gene GATA motif-containing MPRA enhancer 179 Neighboring gene ferritin heavy chain 1 pseudogene 26 Neighboring gene long intergenic non-protein coding RNA 1312 Neighboring gene transcription factor 21 Neighboring gene TATA-box binding protein like 1 Neighboring gene solute carrier family 2 member 12

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies protein quantitative trait loci (pQTLs).
EBI GWAS Catalog
Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.
EBI GWAS Catalog
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog
Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109982.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356109, AL450270, BC041459, BQ009762, DA836644
    Related
    ENST00000607033.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    133502252..133889006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center