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SMC5-DT SMC5 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100507299, updated on 25-Jan-2022

Summary

Official Symbol
SMC5-DTprovided by HGNC
Official Full Name
SMC5 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48718
See related
AllianceGenome:HGNC:48718
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMC5-AS1; MAMDC2-AS2
Expression
Low expression observed in reference dataset See more
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Genomic context

See SMC5-DT in Genome Data Viewer
Location:
9q21.12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (70216059..70258874, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (72830975..72873790, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MAM domain containing 2 Neighboring gene MAMDC2 antisense RNA 1 Neighboring gene RNA, U2 small nuclear 5, pseudogene Neighboring gene RPL24 pseudogene 8 Neighboring gene structural maintenance of chromosomes 5 Neighboring gene Kruppel like factor 9 Neighboring gene KLF9 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • SMC5 antisense RNA 1 (head to head)

Clone Names

  • DKFZp686I1668

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_039990.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI984490, AL162390, BC040840

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    70216059..70258874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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