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SMLR1 small leucine rich protein 1 [ Homo sapiens (human) ]

Gene ID: 100507203, updated on 5-Jan-2022

Summary

Official Symbol
SMLR1provided by HGNC
Official Full Name
small leucine rich protein 1provided by HGNC
Primary source
HGNC:HGNC:44670
See related
Ensembl:ENSG00000256162
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in liver (RPKM 12.7), duodenum (RPKM 6.5) and 2 other tissues See more
Orthologs
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Genomic context

See SMLR1 in Genome Data Viewer
Location:
6q23.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (130827406..130837135)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (131148546..131158275)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378003 Neighboring gene Sharpr-MPRA regulatory region 8038 Neighboring gene erythrocyte membrane protein band 4.1 like 2 Neighboring gene Sharpr-MPRA regulatory region 2744 Neighboring gene uncharacterized LOC105378004

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ34581

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small leucine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195597.2NP_001182526.1  small leucine-rich protein 1

    See identical proteins and their annotated locations for NP_001182526.1

    Status: VALIDATED

    Source sequence(s)
    AI247685, AK091900, AL355360
    Consensus CDS
    CCDS59036.1
    UniProtKB/Swiss-Prot
    H3BR10
    Related
    ENSP00000456026.1, ENST00000541421.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    130827406..130837135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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