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BMPR1B-DT BMPR1B divergent transcript [ Homo sapiens (human) ]

Gene ID: 100507012, updated on 17-Jun-2024

Summary

Official Symbol
BMPR1B-DTprovided by HGNC
Official Full Name
BMPR1B divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:50864
See related
Ensembl:ENSG00000249599 AllianceGenome:HGNC:50864
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BMPR1B-AS1
Expression
Biased expression in testis (RPKM 5.0), prostate (RPKM 3.8) and 3 other tissues See more
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Genomic context

See BMPR1B-DT in Genome Data Viewer
Location:
4q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (94743668..94757533, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (98058791..98072659, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (95664819..95678684, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:95303965-95304818 Neighboring gene NANOG hESC enhancer GRCh37_chr4:95305750-95306251 Neighboring gene Sharpr-MPRA regulatory region 14184 Neighboring gene ribosomal protein L35a pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:95361510-95361672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15574 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15575 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:95417748-95417936 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:95455489-95456413 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:95456414-95457337 Neighboring gene PDZ and LIM domain 5 Neighboring gene VISTA enhancer hs1438 Neighboring gene bone morphogenetic protein receptor type 1B Neighboring gene NANOG hESC enhancer GRCh37_chr4:95837674-95838175 Neighboring gene uncharacterized LOC124900735 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:96140095-96141294 Neighboring gene Sharpr-MPRA regulatory region 12130 Neighboring gene unc-5 netrin receptor C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:96321208-96321708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:96321709-96322209 Neighboring gene uncharacterized LOC124900736

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • BMPR1B antisense RNA 1 (head to head)
  • TCONS_00007797

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121610.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093634
    Related
    ENST00000510795.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    94743668..94757533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    98058791..98072659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)