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THORLNC testis associated oncogenic lncRNA [ Homo sapiens (human) ]

Gene ID: 100506797, updated on 29-Mar-2023

Summary

Official Symbol
THORLNCprovided by HGNC
Official Full Name
testis associated oncogenic lncRNAprovided by HGNC
Primary source
HGNC:HGNC:53788
See related
Ensembl:ENSG00000226856 MIM:619296; AllianceGenome:HGNC:53788
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
THOR
Expression
Restricted expression toward testis (RPKM 7.6) See more
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Genomic context

See THORLNC in Genome Data Viewer
Location:
2q14.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (118182922..118186386, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (118616222..118619693, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (118940498..118943962, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:118880595-118881794 Neighboring gene uncharacterized LOC124907879 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:118899713-118900386 Neighboring gene uncharacterized LOC105373578 Neighboring gene Sharpr-MPRA regulatory region 9538 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:119007000-119008199

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • testis-associated highly-conserved oncogenic long non-coding RNA

Clone Names

  • AC093901.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144530.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA416642, AC093901, AI126202
    Related
    ENST00000449075.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    118182922..118186386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    118616222..118619693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)