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PANTR1 POU3F3 adjacent non-coding transcript 1 [ Homo sapiens (human) ]

Gene ID: 100506421, updated on 17-Jan-2022

Summary

Official Symbol
PANTR1provided by HGNC
Official Full Name
POU3F3 adjacent non-coding transcript 1provided by HGNC
Primary source
HGNC:HGNC:49513
See related
Ensembl:ENSG00000233639 MIM:618169
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01158; linc-Brn1a; linc-POU3F3
Summary
Predicted to act upstream of or within regulation of gene expression. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in brain (RPKM 2.2) and kidney (RPKM 1.6) See more
Orthologs
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Genomic context

See PANTR1 in Genome Data Viewer
Location:
2q12.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (104805425..104853183, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (105421883..105469641, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1114 Neighboring gene high mobility group box 3 pseudogene 11 Neighboring gene VISTA enhancer hs1553 Neighboring gene POU class 3 homeobox 3 Neighboring gene Sharpr-MPRA regulatory region 193 Neighboring gene long intergenic non-protein coding RNA 1159

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • long intergenic non-protein coding RNA 1158

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037883.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC018730, AK096498, BF700938
  2. NR_131233.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' terminal exon, uses an alternate splice site at an internal exon, and has a shorter 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC018730, CK004193
    Related
    ENST00000447876.5
  3. NR_131234.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site at an internal exon and has a shorter 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC018730, AL036798, BF700938
    Related
    ENST00000413121.6
  4. NR_131235.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site at an internal exon and has a shorter 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC018730, AI879178, BF700938
    Related
    ENST00000443988.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    104805425..104853183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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