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SH3PXD2A-AS1 SH3PXD2A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505839, updated on 13-May-2022

Summary

Official Symbol
SH3PXD2A-AS1provided by HGNC
Official Full Name
SH3PXD2A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:45242
See related
Ensembl:ENSG00000280693 AllianceGenome:HGNC:45242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 6.9) and skin (RPKM 2.8) See more
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Genomic context

See SH3PXD2A-AS1 in Genome Data Viewer
Location:
10q24.33
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (103746779..103755409)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (104634080..104642709)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (105506537..105515167)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene SH3 and PX domains 2A Neighboring gene uncharacterized LOC124902495 Neighboring gene NFE2L2 motif-containing MPRA enhancer 292 Neighboring gene Sharpr-MPRA regulatory region 10495 Neighboring gene Sharpr-MPRA regulatory region 190 Neighboring gene STN1 subunit of CST complex

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056784, AL133355, DA422325
    Related
    ENST00000627886.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    103746779..103755409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    104634080..104642709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)