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PROX1-AS1 PROX1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100505832, updated on 13-May-2022

Summary

Official Symbol
PROX1-AS1provided by HGNC
Official Full Name
PROX1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43656
See related
Ensembl:ENSG00000230461 AllianceGenome:HGNC:43656
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 1.1), testis (RPKM 0.5) and 10 other tissues See more
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Genomic context

See PROX1-AS1 in Genome Data Viewer
Location:
1q32.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (213819641..213986153, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (213059182..213225730, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (213992984..214159496, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase C1 Neighboring gene VISTA enhancer hs204 Neighboring gene ribosomal protein L31 pseudogene 13 Neighboring gene U2 spliceosomal RNA Neighboring gene Sharpr-MPRA regulatory region 2902 Neighboring gene long intergenic non-protein coding RNA 538 Neighboring gene Sharpr-MPRA regulatory region 2293 Neighboring gene prospero homeobox 1 Neighboring gene VISTA enhancer hs2357 Neighboring gene long intergenic non-protein coding RNA 2775

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A comprehensive genetic association study of Alzheimer disease in African Americans.
EBI GWAS Catalog
A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
EBI GWAS Catalog
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
EBI GWAS Catalog
Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.
EBI GWAS Catalog
New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • PROX1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037850.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011700, AC096639, AK092251, AV681804
    Related
    ENST00000659552.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    213819641..213986153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    213059182..213225730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)